PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca14511.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 184aa MW: 20471 Da PI: 6.8581

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca14511.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.9	4.8e-45	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ Dca14511.1 8 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQELPVHQRGDAVSSLVYEANARMRDPVYGCVGAISFLQNQVSQLQMQLAVAQT 106 7**********************************************************************************************9998 PP DUF260 100 e 100 e Dca14511.1 107 E 107 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-44	8	105	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGGNGTSPCA SCKLLRRRCA KDCIFAPYFP SDDPHKFAIV HKIFGASNVS KMLQELPVHQ 60 RGDAVSSLVY EANARMRDPV YGCVGAISFL QNQVSQLQMQ LAVAQTEILC IQMQQEPASS 120 NFTTTTTTTT ATTQNSFDSS DDKSFLLQNN MSHQQFLNYQ SSSDHHVIQD SFKRESFFGH 180 DMVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692935.1	1e-106	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	1e-78	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9QFW0	1e-107	A0A0K9QFW0_SPIOL; Uncharacterized protein
STRING	POPTR_0010s19180.1	2e-90	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-78	LBD family protein